About

A data portal integrating fanta.bio CAGE-derived Candidate Cis-Regulatory Elements (CREs) with ChIP-Atlas Transcription Factor binding peaks.

Methodology

  1. Active CREs (BED score > 1) are intersected with TF ChIP-seq peaks (MACS2 > 50).
  2. Single-cell-like clustering (Seurat) groups fanta.bio samples by intersection profile.
  3. Per-cluster and per-cell-type marker TFs are computed.
  4. For each fanta.bio sample, ChIP-Atlas TF enrichment is computed against all other samples.

Dataset

Data Version: 20260312. See version.

fanta.bio × ChIP-Atlas integration. Data Version: 20260312.